ATCC® BAA-58™ | Gemella palaticanis

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-58™
Strain Alias	CCUG 39489 [CIP 106318, M663-98-1]
Isolation	Vesicle on gum of 1-year-old male Labrador dog diagnosed with long-standing mild inflammatory lesion
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	June 3, 2024
Length	1,745,318 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	1,739,054 nt
%GC	27.65%

Annotations Summary
Number of CDS	1618
Number of Hypothetical Proteins	225
Number of tRNA	41
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	1,256,574
Oxford Nanopore Median Q Score	26
Illumina Read Count	9,647,342
Illumina Mean Coverage Depth	813.083×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	9,647,342
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.28%
Estimated genome contamination	0%
Illumina depth of coverage	813.083×
ONT depth of coverage	2,308.636×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions