Organism Summary | |
---|---|
Catalog Number | ATCC® 43783™ |
Strain Alias | CDC D3518 |
Isolation | Peritoneal fluid |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | December 12, 2022 |
Length | 6,385,143 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (All Circularized) |
N50 | 3,673,622 nt |
%GC | 64.14% |
Annotations Summary | |
---|---|
Number of CDS | 5753 |
Number of Hypothetical Proteins | 633 |
Number of tRNA | 62 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 19,579 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 9,593,081 |
Illumina Mean Coverage Depth | 205.903× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 9,593,081 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.94% |
Estimated genome contamination | 1.06% |
Average depth of coverage | 205.903× |