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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14647™ |
| Strain Alias | [9901, DSM 12112, NCTC 10651] |
| Isolation | Human with rat-bite fever |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2020 |
| Length | 1,685,957 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 1,675,256 nt |
| %GC | 26.26% |
| Annotations Summary | |
|---|---|
| Number of CDS | 1507 |
| Number of Hypothetical Proteins | 316 |
| Number of tRNA | 39 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 35,357 |
| Oxford Nanopore Median Q Score | 28 |
| Illumina Read Count | 16,496,194 |
| Illumina Mean Coverage Depth | 1,252.764× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 16,496,194 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.88% |
| Estimated genome contamination | 1.12% |
| Average depth of coverage | 1,252.764× |
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