Organism Summary | |
---|---|
Catalog Number | ATCC® 700872™ |
Isolation | Soil |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | February 26, 2020 |
Length | 5,829,137 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (3 Circularized) |
N50 | 5,408,916 nt |
%GC | 35.26% |
Annotations Summary | |
---|---|
Number of CDS | 5903 |
Number of Hypothetical Proteins | 784 |
Number of tRNA | 117 |
Number of 5s rRNA | 12 |
Number of 16s rRNA | 12 |
Number of 23s rRNA | 12 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 27,477 |
Oxford Nanopore Median Q Score | 14 |
Illumina Read Count | 4,085,015 |
Illumina Mean Coverage Depth | 166.737× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 4,085,015 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.34% |
Estimated genome contamination | 0.85% |
Average depth of coverage | 166.737× |