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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1884™ |
| Strain Alias | A/California/07/2009 NYMC X-179A |
| Isolation | Classical reassortant virus derived from A/California/07/2009 (H1N1)pdm09 and A/Puerto Rico/8/1934 (H1N1). |
| Biosafety Level | 2 |
| Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 13,760 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 8 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 1,826 nt |
| %GC | 43.23% |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 1,911,849 |
| Illumina Mean Coverage Depth | 7,158.575× |
| Illumina Median Q Score | 38 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was manually assembled and curated, due to its automated assembly not meeting our reference-based quality filtering. See our technical documentation for further details: http://docs.onecodex.com/en/articles/3996287-genome-assembly
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