ATCC® TSD-403™ | Psychrobacter sp

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-403™
Strain Alias	7E
Isolation	Arctic Ocean, Southern Beaufort Sea, first-year sea-ice floe, latitude 71.05N, longitude 125.53W
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	March 5, 2024
Length	3,481,229 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (5 Circularized)
N50	3,439,824 nt
%GC	42.77%

Annotations Summary
Number of CDS	2917
Number of Hypothetical Proteins	388
Number of tRNA	44
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	50,235
Oxford Nanopore Median Q Score	24
Illumina Read Count	7,271,316
Illumina Mean Coverage Depth	308.552×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	7,271,316
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.41%
Estimated genome contamination	1.27%
Illumina depth of coverage	308.552×
ONT depth of coverage	162.599×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions