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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | May 1, 2020 |
| Length | 4,170,707 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,151,331 nt |
| %GC | 41.82% |
| Organism Summary | |
|---|---|
| Name | ATCC® 35676™ |
| Isolation | Salt marsh soil |
| Tags | MSA ComponentType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,999 |
| Number of Hypothetical Proteins | 567 |
| Number of tRNA | 67 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 35,351 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 8,466,894 |
| Illumina Mean Coverage Depth | 448.527× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,466,894
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.33%
PassedEstimated genome contamination1.33%
PassedAverage depth of coverage448.527×
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