Organism Summary | |
---|---|
Catalog Number | ATCC® 700642™ |
Strain Alias | I [IFO 16733] |
Isolation | Humus soil from Ramsar Forest near the Caspian Sea |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | March 5, 2024 |
Length | 3,678,004 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (0 Circularized) |
N50 | 3,409,508 nt |
%GC | 73.55% |
Annotations Summary | |
---|---|
Number of CDS | 3218 |
Number of Hypothetical Proteins | 425 |
Number of tRNA | 45 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 232,070 |
Oxford Nanopore Median Q Score | 26 |
Illumina Read Count | 7,930,870 |
Illumina Mean Coverage Depth | 318.561× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 7,930,870 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 100% |
Estimated genome contamination | 0% |
Average depth of coverage | 318.561× |
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions