ATCC® 17976™ | Acinetobacter indicus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 3, 2023
Length	3,131,698 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (3 Circularized)
N50	1,986,968 nt
%GC	45.8%

Annotations Summary
Number of CDS	2929
Number of Hypothetical Proteins	378
Number of tRNA	77
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	39,883
Oxford Nanopore Median Q Score	14
Illumina Read Count	5,274,002
Illumina Mean Coverage Depth	248.837×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	5,274,002
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.93%
Estimated genome contamination	0.27%
Illumina depth of coverage	248.837×
ONT depth of coverage	141.933×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions