ATCC® BAA-3347™ | Cronobacter sakazakii

Overview

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Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	4,614,990 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (All Circularized)
N50	4,444,971 nt
%GC	56.59%

Annotations Summary
Number of CDS	4255
Number of Hypothetical Proteins	267
Number of tRNA	82
Number of 5s rRNA	8
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	84,729
Oxford Nanopore Median Q Score	32
Illumina Read Count	14,541,898
Illumina Mean Coverage Depth	466.53×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	14,541,898
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.69%
Estimated genome contamination	0.19%
Illumina depth of coverage	466.53×
ONT depth of coverage	84.162×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions