ATCC® 700690™ | Pseudomonas nitroreducens

Overview

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Organism Summary
Catalog Number	ATCC® 700690™
Strain Alias	IpA-1 [LMG 20221]
Isolation	Water from bioreactor treating high-strength process stream from paper mill
Tags	Methylation Data
Biosafety Level	1
Type Strain	No

Assembly Summary
Date Published	September 25, 2024
Length	6,691,019 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	6,691,019 nt
%GC	64.45%

Annotations Summary
Number of CDS	6094
Number of Hypothetical Proteins	557
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	224,009
Oxford Nanopore Median Q Score	34
Illumina Read Count	6,914,032
Illumina Mean Coverage Depth	151.684×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	6,914,032
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	1.64%
Illumina depth of coverage	151.684×
ONT depth of coverage	110.646×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions