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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 1007™ |
| Strain Alias | QM 1276 [ATCC 9598, ATCC 9602, CBS 513.65, CCC-T-191b, IMI 15949, LSHB Ac86, LSHB Ac95, MIT 213, NCTC 3887, NCTC 978, NRRL 1, NRRL 1656, QM 7404, Thom 107, WB 1] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 28,008,845 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 13 (0 Circularized) |
| N50 | 3,853,524 nt |
| %GC | 48.99% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 756 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 523,838 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 35,093,080 |
| Illumina Mean Coverage Depth | 177.686× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 35,093,080 |
| Median Q score, all bases | 37 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.68% |
| Average depth of coverage | 177.686× |
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