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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 5,760,495 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (5 Circularized) |
| Assembly Level | Chromosome |
| N50 | 5,302,865 nt |
| %GC | 57.1% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-1705™ |
| Isolation | Urine; 2007 CAP Survey |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,633 |
| Number of Hypothetical Proteins | 450 |
| Number of tRNA | 87 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 126,488 |
| Oxford Nanopore Median Q Score | 15 |
| Illumina Read Count | 3,052,594 |
| Illumina Mean Coverage Depth | 99.827× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads3,052,594
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
2 out of 3 passed, 1 requires inspection
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.12%
CautionAverage depth of coverage99.827×
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