Organism Summary | |
---|---|
Catalog Number | ATCC® TSD-358™ |
Isolation | Water from inside the forest canopy |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | June 3, 2024 |
Length | 50,056,266 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 81 (0 Circularized) |
N50 | 1,053,320 nt |
%GC | 54.71% |
Annotations Summary | |
---|---|
Number of BUSCO Annotations | 404 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 400,421 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 108,352,930 |
Illumina Mean Coverage Depth | 318.304× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 108,352,930 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
---|---|
Estimated genome completeness | 53.3% |
Average depth of coverage | 318.304× |
This protist was assembled and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions