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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® TSD-358™ |
| Strain Alias | WR-C40 |
| Isolation | Water from inside the forest canopy |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 3, 2024 |
| Length | 50,056,266 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 81 (0 Circularized) |
| N50 | 1,053,320 nt |
| %GC | 54.71% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 404 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 400,421 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 108,352,930 |
| Illumina Mean Coverage Depth | 318.304× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 108,352,930 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 53.3% |
| Average depth of coverage | 318.304× |
Notes
This protist was assembled and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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