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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 50134™ |
| Strain Alias | MHOM/TN/80/IPT-1 |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | September 28, 2022 |
| Length | 32,427,167 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 48 (0 Circularized) |
| N50 | 857,449 nt |
| %GC | 59.65% |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 105,533 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 54,633,294 |
| Illumina Mean Coverage Depth | 215.481× |
| Illumina Median Q Score | 34 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 54,633,294 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
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