As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
- Leishmania donovani species complex
- Leishmania infantum
Leishmania infantum (ATCC® 50134™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 28, 2022 |
| Length | 32,427,167 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 48 |
| Assembly Level | Scaffold |
| N50 | 857,449 nt |
| %GC | 59.65% |
| Organism Summary | |
|---|---|
| Name | ATCC® 50134™ |
| Biosafety Level | 2 |
| Type Strain | No |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 105,533 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 54,633,294 |
| Illumina Mean Coverage Depth | 215.481× |
| Illumina Median Q Score | 34 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads54,633,294
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline