Organism Summary | |
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Catalog Number | ATCC® 50134™ |
Strain Alias | MHOM/TN/80/IPT-1 |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | September 28, 2022 |
Length | 32,427,167 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 48 (0 Circularized) |
N50 | 857,449 nt |
%GC | 59.65% |
Input Reads Summary | |
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Oxford Nanopore Read Count | 105,533 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 54,633,294 |
Illumina Mean Coverage Depth | 215.481× |
Illumina Median Q Score | 34 |
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 54,633,294 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |