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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 35733™ |
| Strain Name | TMC 1010 [BCG Danish] |
| Isolation | Bovine milk |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | June 30, 2022 |
| Length | 4,329,807 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (1 Circularized) |
| N50 | 1,889,906 nt |
| %GC | 65.67% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3998 |
| Number of Hypothetical Proteins | 418 |
| Number of tRNA | 45 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 283,474 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 12,675,598 |
| Illumina Mean Coverage Depth | 384.78× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads12,675,598
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.78%
Estimated genome contamination0%
Average depth of coverage384.78×
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