Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 35733™ |
| Strain Alias | TMC 1010 [BCG Danish] |
| Isolation | Bovine milk |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | June 30, 2022 |
| Length | 4,329,807 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (1 Circularized) |
| N50 | 1,889,906 nt |
| %GC | 65.67% |
Annotations Summary | |
|---|---|
| Number of CDS | 4015 |
| Number of Hypothetical Proteins | 411 |
| Number of tRNA | 45 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 283,474 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 12,675,598 |
| Illumina Mean Coverage Depth | 384.78× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
0 out of 0 selected (Select All / Deselect All).
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 12,675,598 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 95.11% |
| Estimated genome contamination | 0.37% |
| Illumina depth of coverage | 384.78× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline