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  • Lachnoclostridium
  • [Clostridium] symbiosum

Clostridium symbiosum (ATCC® 14940™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedNovember 30, 2021
Length5,034,907 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (1 Circularized)
Assembly SummaryChromosome
N505,004,498 nt
%GC47.81%
Organism Summary
NameATCC® 14940™
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,426
Number of Hypothetical Proteins2,171
Number of tRNA65
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count1,514,041
Oxford Nanopore Median Q Score23
Illumina Read Count19,250,003
Illumina Mean Coverage Depth517.554×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads19,250,003
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.37%
PassedEstimated genome contamination0%
PassedAverage depth of coverage517.554×
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