Organism Summary | |
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Catalog Number | ATCC® 38741™ |
Strain Alias | 1 |
Isolation | Cavendish banana tree |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | June 10, 2025 |
Length | 44,419,963 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 73 (0 Circularized) |
N50 | 3,822,508 nt |
%GC | 47.83% |
Annotations Summary | |
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Number of BUSCO Annotations | 754 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 586,243 |
Oxford Nanopore Median Q Score | 41 |
Illumina Read Count | 136,299,844 |
Illumina Mean Coverage Depth | 372.85× |
Illumina Median Q Score | 40 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 136,299,844 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 99.5% |
Average depth of coverage | 372.85× |
This fungus was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions