Organism Summary | |
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Catalog Number | ATCC® 27340™ |
Strain Alias | VPI 4299 [2396] |
Isolation | Septicemia |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | March 27, 2020 |
Length | 6,200,054 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (2 Circularized) |
N50 | 1,899,533 nt |
%GC | 45.72% |
Annotations Summary | |
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Number of CDS | 5714 |
Number of Hypothetical Proteins | 861 |
Number of tRNA | 69 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 31,455 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 5,897,975 |
Illumina Mean Coverage Depth | 130.042× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,897,975 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.36% |
Estimated genome contamination | 0% |
Average depth of coverage | 130.042× |