Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 6,200,054 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (2 Circularized) |
| N50 | 1,899,533 nt |
| %GC | 45.72% |
| Organism Summary | |
|---|---|
| Name | ATCC® 27340™ |
| Strain Name | VPI 4299 [2396] |
| Isolation | Septicemia |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5714 |
| Number of Hypothetical Proteins | 861 |
| Number of tRNA | 69 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 31,455 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 5,897,975 |
| Illumina Mean Coverage Depth | 130.042× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,897,975
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.36%
PassedEstimated genome contamination0%
PassedAverage depth of coverage130.042×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline