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- Alternaria alternata complex
- Alternaria alternata
Alternaria alternata (ATCC® 6663™)
Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 21, 2025 |
| Length | 33,672,246 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 19 |
| Assembly Level | Scaffold |
| N50 | 2,369,960 nt |
| %GC | 51.07% |
| Organism Summary | |
|---|---|
| Name | ATCC® 6663™ |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 754 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 308,953 |
| Oxford Nanopore Median Q Score | 32 |
| Illumina Read Count | 67,513,068 |
| Illumina Mean Coverage Depth | 297.171× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads67,513,068
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness99.4%
PassedAverage depth of coverage297.171×
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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