ATCC® VR-885™ | Chlamydia trachomatis Serovar D

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 30, 2024
Length	1,091,103 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (5 Circularized)
Assembly Level	Chromosome
N50	1,042,521 nt
%GC	41.27%

Organism Summary
Name	ATCC® VR-885™
Isolation	Human cervix, asymptomatic.
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	934
Number of Hypothetical Proteins	166
Number of tRNA	40
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	260,058
Oxford Nanopore Median Q Score	35
Illumina Read Count	4,023,540
Illumina Mean Coverage Depth	133.374×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads4,023,540

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.01%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.92%

PassedEstimated genome contamination0%

PassedAverage depth of coverage133.374×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia trachomatis Serovar D (ATCC® VR-885™)