ATCC® 35568™ | Schaalia meyerI

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	2,034,127 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	2,034,127 nt
%GC	65.57%

Annotations Summary
Number of CDS	1739
Number of Hypothetical Proteins	191
Number of tRNA	49
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	161,733
Oxford Nanopore Median Q Score	26
Illumina Read Count	12,063,766
Illumina Mean Coverage Depth	875.932×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	12,063,766
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0.63%
Illumina depth of coverage	875.932×
ONT depth of coverage	683.315×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions