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- Clavibacter michiganensis
- Clavibacter michiganensis subsp. michiganensis
Clavibacter michiganensis subsp. michiganensis (ATCC® 7430™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 28, 2020 |
| Length | 3,248,124 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| Assembly Level | Complete |
| N50 | 3,191,467 nt |
| %GC | 72.81% |
| Organism Summary | |
|---|---|
| Name | ATCC® 7430™ |
| Isolation | Plant |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,036 |
| Number of Hypothetical Proteins | 433 |
| Number of tRNA | 45 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 145,526 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 5,423,225 |
| Illumina Mean Coverage Depth | 251.382× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,423,225
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.24%
PassedEstimated genome contamination0%
PassedAverage depth of coverage251.382×
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