ATCC® VR-887™ | Chlamydia trachomatis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 30, 2024
Length	1,074,997 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	5 (4 Circularized)
Assembly Level	Chromosome
N50	1,042,382 nt
%GC	41.22%

Organism Summary
Name	ATCC® VR-887™
Isolation	Human cervix, cervicitis.
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	923
Number of Hypothetical Proteins	160
Number of tRNA	40
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	375,512
Oxford Nanopore Median Q Score	35
Illumina Read Count	4,350,952
Illumina Mean Coverage Depth	194.898×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads4,350,952

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.01%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.92%

PassedEstimated genome contamination0%

PassedAverage depth of coverage194.898×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia trachomatis (ATCC® VR-887™)