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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14266™ |
| Strain Name | 47 [IFO 15360, NCTC 10254, PCM 2414] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 2,868,869 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 2,868,869 nt |
| %GC | 57.07% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2509 |
| Number of Hypothetical Proteins | 535 |
| Number of tRNA | 50 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 1,518,146 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 4,230,948 |
| Illumina Mean Coverage Depth | 190.758× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads4,230,948
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.89%
Estimated genome contamination0%
Average depth of coverage190.758×
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