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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 19296™ |
| Strain Name | IMRU 845 [381; 631; 337, 842, IFO 14402] |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | July 1, 2021 |
| Length | 8,944,227 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 8,756,141 nt |
| %GC | 68.24% |
| Annotations Summary | |
|---|---|
| Number of CDS | 8067 |
| Number of Hypothetical Proteins | 1286 |
| Number of tRNA | 51 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 210,276 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 15,177,483 |
| Illumina Mean Coverage Depth | 231.728× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads15,177,483
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.75%
Estimated genome contamination3.7%
Average depth of coverage231.728×
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