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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 56500™ |
| Strain Alias | UCD 72-13 [CBS 6430, CCRC 22066, DBVPG 6233, IFO 1666, NCYC 2644, NRRL Y-8285] |
| Isolation | Exudate of Ilex integra |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 10,776,100 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 18 (0 Circularized) |
| N50 | 1,217,604 nt |
| %GC | 44.41% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 742 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 318,353 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 9,573,431 |
| Illumina Mean Coverage Depth | 193.469× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 9,573,431 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 93.14% |
| Average depth of coverage | 193.469× |
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