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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 10,776,100 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 18 |
| Assembly Level | Scaffold |
| N50 | 1,217,604 nt |
| %GC | 44.41% |
| Organism Summary | |
|---|---|
| Name | ATCC® 56500™ |
| Isolation | Exudate of Ilex integra |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 742 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 318,353 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 9,573,431 |
| Illumina Mean Coverage Depth | 193.469× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads9,573,431
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness93.14%
PassedAverage depth of coverage193.469×
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