Organism Summary | |
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Catalog Number | ATCC® 700962™ |
Strain Alias | RF-4 [DSM 12459] |
Isolation | Hot spring |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | July 17, 2024 |
Length | 2,316,143 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 14 (1 Circularized) |
N50 | 1,585,050 nt |
%GC | 68.77% |
Annotations Summary | |
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Number of CDS | 2379 |
Number of Hypothetical Proteins | 243 |
Number of tRNA | 48 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 51,802 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 18,094,742 |
Illumina Mean Coverage Depth | 1,381.711× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 18,094,742 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 0% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.58% |
Estimated genome contamination | 1.27% |
Average depth of coverage | 1,381.711× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions