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  • Salmonella enterica subsp. enterica subsp. ex

Salmonella enterica subsp. enterica subsp. ex (ATCC® 6967™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 3, 2022
Length4,613,593 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N504,610,927 nt
%GC52.16%
Organism Summary
NameATCC® 6967™
Genotype
IsolationGuinea pig
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS4,275
Number of Hypothetical Proteins1,017
Number of tRNA87
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count61,253
Oxford Nanopore Median Q Score23
Illumina Read Count10,036,808
Illumina Mean Coverage Depth288.511×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads10,036,808
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.33%
PassedAverage depth of coverage288.511×
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