ATCC® BAA-3442™ | Neisseria gonorrhoeae strain 1081168

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-3442™
Isolation	Urethra
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	June 18, 2025
Length	2,215,100 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	2,210,947 nt
%GC	52.35%

Annotations Summary
Number of CDS	2260
Number of Hypothetical Proteins	345
Number of tRNA	55
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	43,150
Oxford Nanopore Median Q Score	41
Illumina Read Count	8,153,212
Illumina Mean Coverage Depth	541.512×
Illumina Median Q Score	40

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	8,153,212
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.06%
Estimated genome contamination	1%
Average depth of coverage	541.512×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Neisseria gonorrhoeae strain 1081168 (ATCC® BAA-3442™)