ATCC® 33761™ | Legionella oakridgensis

Overview

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Quality Control

Organism Summary
Name	ATCC® 33761™
Strain Name	Oak Ridge 10 [CIP 103884, NCTC 11531, OR-10]
Isolation	Industrial cooling tower water
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	November 30, 2023
Length	2,776,189 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (All Circularized)
N50	2,725,943 nt
%GC	40.86%

Annotations Summary
Number of CDS	2581
Number of Hypothetical Proteins	452
Number of tRNA	44
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	72,142
Oxford Nanopore Median Q Score	26
Illumina Read Count	15,277,682
Illumina Mean Coverage Depth	812.741×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

Number of trimmed reads15,277,682

Median Q score, all bases34

Percent of median Q scores per cycle greater than 251%

Ambiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

Estimated genome completeness98.83%

Estimated genome contamination0.19%

Average depth of coverage812.741×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Legionella oakridgensis (ATCC® 33761™)