ATCC® BAA-33™ | Azospira oryzae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-33™
Strain Alias	PS [DSM 13638]
Isolation	sediment, swine waste primary lagoon
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	November 30, 2023
Length	3,867,736 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (0 Circularized)
N50	3,650,512 nt
%GC	65.22%

Annotations Summary
Number of CDS	3556
Number of Hypothetical Proteins	419
Number of tRNA	58
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	43,791
Oxford Nanopore Median Q Score	25
Illumina Read Count	10,512,536
Illumina Mean Coverage Depth	400.137×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	10,512,536
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	98.28%
Estimated genome contamination	0.47%
Illumina depth of coverage	400.137×
ONT depth of coverage	226.571×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions