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- Pseudomonas syringae group genomosp. 1
- Pseudomonas syringae pathovar phaseolicola
Pseudomonas syringae pathovar phaseolicola (ATCC® 21781™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | May 30, 2022 |
| Length | 6,103,638 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | None |
| N50 | 5,930,532 nt |
| %GC | 57.9% |
| Organism Summary | |
|---|---|
| Name | ATCC® 21781™ |
| Isolation | Snap bean straw |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,479 |
| Number of Hypothetical Proteins | 509 |
| Number of tRNA | 64 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 53,059 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 13,904,987 |
| Illumina Mean Coverage Depth | 311.891× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads13,904,987
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.84%
PassedEstimated genome contamination0.17%
PassedAverage depth of coverage311.891×
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