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  • Bifidobacterium
  • Bifidobacterium breve

Bifidobacterium breve (ATCC® 15701™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedOctober 28, 2020
Length2,486,007 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly SummaryComplete
N502,295,595 nt
%GC58.56%
Organism Summary
NameATCC® 15701™
IsolationIntestine
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,126
Number of Hypothetical Proteins1,057
Number of tRNA72
Number of 5s rRNA0
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count244,201
Oxford Nanopore Median Q Score25
Illumina Read Count25,836,405
Illumina Mean Coverage Depth1,391.877×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads25,836,405
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage1,391.877×
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