Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-2787™ |
| Strain Alias | BK34786 |
| Isolation | Urine |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | August 27, 2019 |
| Length | 5,611,689 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| N50 | 5,350,357 nt |
| %GC | 57.13% |
Annotations Summary | |
|---|---|
| Number of CDS | 5500 |
| Number of Hypothetical Proteins | 406 |
| Number of tRNA | 87 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 298,113 |
| Oxford Nanopore Median Q Score | 15 |
| Illumina Read Count | 4,770,964 |
| Illumina Mean Coverage Depth | 159.889× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
0 out of 0 selected (Select All / Deselect All).
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 4,770,964 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.81% |
| Estimated genome contamination | 0.19% |
| Illumina depth of coverage | 159.889× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline