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  • Schaalia
  • Schaalia odontolytica

Schaalia odontolytica (ATCC® 17982™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 27, 2019
Length2,396,044 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N502,396,044 nt
%GC65.44%
Organism Summary
NameATCC® 17982™
IsolationCarious lesions of the dentine
TagsMSA Component
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS2,022
Number of Hypothetical Proteins929
Number of tRNA49
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count272,492
Oxford Nanopore Median Q Score19
Illumina Read Count3,932,179
Illumina Mean Coverage Depth289.062×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,932,179
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.47%
PassedAverage depth of coverage289.062×
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