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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-2018™ |
| Strain Alias | Wa (TC adapted) |
| Isolation | Diarrhea stool from patient positive for rotavirus. |
| Biosafety Level | 2 |
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 17,050 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 2,568 nt |
| %GC | 31.55% |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 476,685 |
| Oxford Nanopore Median Q Score | 17 |
| Illumina Read Count | 3,051,336 |
| Illumina Mean Coverage Depth | 13,865.085× |
| Illumina Median Q Score | 39 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Median Q score, all bases | 39 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was assembled and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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