Assembly Summary | |
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Date Published | April 29, 2024 |
Length | 4,155,103 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (2 Circularized) |
Assembly Level | Chromosome |
N50 | 4,057,820 nt |
%GC | 53.59% |
Organism Summary | |
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Name | ATCC® 33892™ |
Isolation | Ditch mud |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Annotations Summary | |
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Number of CDS | 3,478 |
Number of Hypothetical Proteins | 673 |
Number of tRNA | 65 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 128,684 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 13,386,448 |
Illumina Mean Coverage Depth | 477.582× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions