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Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 10, 2024 |
| Length | 4,968 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 4,968 nt |
| %GC | 40.46% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1902™ |
| Isolation | Brain tissue from an SIV-infected rhesus monkey |
| Tags | |
| Biosafety Level | 2 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,879,398 |
| Illumina Mean Coverage Depth | 12,439.313× |
| Illumina Median Q Score | 39 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases39
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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