Organism Summary | |
---|---|
Catalog Number | ATCC® 49635™ |
Strain Alias | NCTC 10547 [71, A82, I] |
Isolation | Bovine suppurating pre-scapular lymph gland |
Tags | Type Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | February 21, 2025 |
Length | 4,678,864 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (All Circularized) |
N50 | 4,608,524 nt |
%GC | 47.5% |
Annotations Summary | |
---|---|
Number of CDS | 4096 |
Number of Hypothetical Proteins | 326 |
Number of tRNA | 69 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 342,877 |
Oxford Nanopore Median Q Score | 26 |
Illumina Read Count | 14,667,240 |
Illumina Mean Coverage Depth | 464.597× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 14,667,240 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.92% |
Estimated genome contamination | 0.08% |
Average depth of coverage | 464.597× |
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions