Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads11,975,260
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Notes
The assembly here is deposited as a co-culture of two organisms as is received in the stock vial. Due to the bacterial predation activity of ATCC 15145, it was deposited and grown as a co-culture with its host bacterium, Pseudomonas putida ATCC 12633. Contigs 2, 3, 4, and 5 of this assembly belongs to Pseudomonas putida ATCC 12633 (genomeID - 2024a871828a4f61); contig 1 belongs to Peredibacter starrii ATCC 15145. Due to these contraints, CheckM contamination QC thresholds have been ignored for this co-culture assembly. This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
