| Assembly Summary | |
|---|---|
| Date Published | June 3, 2024 |
| Length | 10,319,729 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (1 Circularized) |
| Assembly Level | None |
| N50 | 2,680,337 nt |
| %GC | 54.43% |
| Organism Summary | |
|---|---|
| Name | ATCC® 15145™ |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 9,581 |
| Number of Hypothetical Proteins | 1,763 |
| Number of tRNA | 110 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 536,839 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 11,975,260 |
| Illumina Mean Coverage Depth | 171.02× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Assembly Quality Control
Notes
The assembly here is deposited as a co-culture of two organisms as is received in the stock vial. Due to the bacterial predation activity of ATCC 15145, it was deposited and grown as a co-culture with its host bacterium, Pseudomonas putida ATCC 12633. Contigs 2, 3, 4, and 5 of this assembly belongs to Pseudomonas putida ATCC 12633 (genomeID - 2024a871828a4f61); contig 1 belongs to Peredibacter starrii ATCC 15145. Due to these contraints, CheckM contamination QC thresholds have been ignored for this co-culture assembly. This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions