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- Severe acute respiratory syndrome-related coronavirus
- Severe acute respiratory syndrome coronavirus 2
Severe acute respiratory syndrome coronavirus 2 (ATCC® VR-1994™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 4, 2020 |
| Length | 29,908 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 1 |
| Assembly Level | Complete |
| N50 | 29,908 nt |
| %GC | 38% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1994™ |
| Isolation | Derived from hCoV-19/Germany/BavPat1/2020, which was originally isolated from a sputum sample from a mildly symptomatic adult male patient identified as Patient One in the Bavarian cluster on January 28, 2020 in Bavaria, Germany. This item has 5 sequence variants (4 with single nucleotide polymorphisms and one 21 nucleotide deletion in the Spike CDS region) compared to the original clinical isolate sequence. |
| Biosafety Level | 3 |
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 2,918,011 |
| Illumina Mean Coverage Depth | 2,249.615× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
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