Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 |
| Length | 4,548,108 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (0 Circularized) |
| N50 | 4,548,108 nt |
| %GC | 69.27% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-450™ |
| Tags | |
| Annotations Summary | |
|---|---|
| Number of CDS | 3969 |
| Number of Hypothetical Proteins | 496 |
| Number of tRNA | 53 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 44,987 |
| Oxford Nanopore Median Q Score | 34 |
| Illumina Read Count | 5,618,102 |
| Illumina Mean Coverage Depth | 181.815× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,618,102
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
2 out of 3 passed, 1 failed
FailedEstimated genome completeness81.55%
PassedEstimated genome contamination6.12%
PassedAverage depth of coverage181.815×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline