Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
- Mycobacterium simiae complex
- Mycobacterium lentiflavum
Mycobacterium lentiflavum (ATCC® 51987™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 8, 2023 |
| Length | 6,691,725 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (4 Circularized) |
| N50 | 6,020,146 nt |
| %GC | 65.82% |
| Organism Summary | |
|---|---|
| Name | ATCC® 51987™ |
| Isolation | Sputum |
| Tags | |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 6239 |
| Number of Hypothetical Proteins | 849 |
| Number of tRNA | 49 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 67,170 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 10,148,466 |
| Illumina Mean Coverage Depth | 205.884× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads10,148,466
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.53%
PassedEstimated genome contamination0.89%
PassedAverage depth of coverage205.884×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline