ATCC® 700587™ | Rhodoferax antarcticus

Overview

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Quality Control

Assembly Summary
Date Published	October 30, 2024
Length	4,211,560 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (All Circularized)
N50	3,916,270 nt
%GC	58.42%

Annotations Summary
Number of CDS	4101
Number of Hypothetical Proteins	660
Number of tRNA	70
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	33,233
Oxford Nanopore Median Q Score	34
Illumina Read Count	4,900,676
Illumina Mean Coverage Depth	170.76×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	4,900,676
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.91%
Estimated genome contamination	2.31%
Illumina depth of coverage	170.76×
ONT depth of coverage	59.37×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions