Organism Summary | |
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Catalog Number | ATCC® BAA-104™ |
Strain Alias | NCIMB 13582 [NVI 88/441] |
Isolation | Atlantic salmon, Salmo salar, with winter ulcer disease |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | April 29, 2024 |
Length | 5,188,441 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (5 Circularized) |
N50 | 3,295,870 nt |
%GC | 38.45% |
Annotations Summary | |
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Number of CDS | 4644 |
Number of Hypothetical Proteins | 675 |
Number of tRNA | 117 |
Number of 5s rRNA | 13 |
Number of 16s rRNA | 12 |
Number of 23s rRNA | 11 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 81,662 |
Oxford Nanopore Median Q Score | 36 |
Illumina Read Count | 11,214,602 |
Illumina Mean Coverage Depth | 316.067× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 11,214,602 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.84% |
Estimated genome contamination | 1.35% |
Average depth of coverage | 316.067× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions