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  • Klebsiella
  • Klebsiella pneumoniae

Klebsiella pneumoniae (ATCC® BAA-2473™)

Overview
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Related Genomes
Quality Control
Assembly Level
Date PublishedSeptember 2, 2021
Length6,008,759 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs10 (8 Circularized)
Assembly SummaryChromosome
N502,464,088 nt
%GC56.86%
Organism Summary
NameATCC® BAA-2473™
IsolationHuman urine
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS5,583
Number of Hypothetical Proteins1,650
Number of tRNA85
Number of 5s rRNA9
Number of 16s rRNA8
Number of 23s rRNA8
Input Reads Summary
Oxford Nanopore Read Count403,794
Oxford Nanopore Median Q Score23
Illumina Read Count8,569,001
Illumina Mean Coverage Depth137.728×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads8,569,001
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.23%
PassedAverage depth of coverage137.728×
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