ATCC® BAA-1716™ | Streptococcus equi subsp. zooepidemicus

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1716™
Strain Alias	MGCS10565
Isolation	Throat of patient with APSGN (acute poststreptococcal glomerulonephritis) diagnosed during outbreak
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	March 5, 2024
Length	2,029,256 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	2,029,256 nt
%GC	41.86%

Annotations Summary
Number of CDS	1824
Number of Hypothetical Proteins	142
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	543,861
Oxford Nanopore Median Q Score	25
Illumina Read Count	7,782,372
Illumina Mean Coverage Depth	564.972×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	7,782,372
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0%
Illumina depth of coverage	564.972×
ONT depth of coverage	758.992×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions