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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 34100™ |
| Strain Alias | 8656 [CBS 525.76, NIH/UT8656] |
| Genotype | WdCHS3 |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | October 30, 2020 |
| Length | 26,414,525 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (0 Circularized) |
| N50 | 3,890,422 nt |
| %GC | 51.51% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 755 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 159,544 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 30,347,778 |
| Illumina Mean Coverage Depth | 157.947× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 30,347,778 |
| Median Q score, all bases | 37 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.68% |
| Average depth of coverage | 157.947× |
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