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Purchased a product from ATCC? Enter in the lot number to download the omics data or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 51242™ |
| Strain Alias | JCM 2153 [DSM 5868, IAM12072; P-1, IFO 14777, NCIMB 12766] |
| Isolation | Radioactive thermal spring |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 3,398,150 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (2 Circularized) |
| N50 | 2,902,919 nt |
| %GC | 66.52% |
Annotations Summary | |
|---|---|
| Number of CDS | 3279 |
| Number of Hypothetical Proteins | 487 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 158,318 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 3,402,513 |
| Illumina Mean Coverage Depth | 131.761× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 3,402,513 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 97.05% |
| Estimated genome contamination | 1.21% |
| Illumina depth of coverage | 131.761× |
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